A conserved START domain coenzyme Q-binding polypeptide is required for efficient Q biosynthesis, respiratory electron transport, and antioxidant function in Saccharomyces cerevisiae, Biochimica et Biophysica Acta, vol.1831, issue.4, pp.776-791, 2013. ,
Intracellular bacterial biofilm-like pods in urinary tract infections, Science, vol.301, pp.105-107, 2003. ,
The genome sequence of Rickettsia prowazekii and the origin of mitochondria, Nature, vol.396, issue.6707, pp.133-140, 1998. ,
Bacterial electron transport chains, Annual Review of Biochemistry, vol.57, pp.101-132, 1988. ,
PHASTER: A better, faster version of the PHAST phage search tool, Nucleic Acids Research, vol.44, issue.W1, pp.16-21, 2016. ,
ubiJ, a new gene required for aerobic growth and proliferation in macrophage, is involved in coenzyme Q biosynthesis in Escherichia coli and Salmonella enterica serovar Typhimurium, Journal of Bacteriology, vol.196, issue.1, pp.70-79, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-00917119
Coenzyme Q10 deficiencies: Pathways in yeast and humans, Essays in Biochemistry, vol.62, issue.3, pp.361-376, 2018. ,
Definitions and guidelines for research on antibiotic persistence, Nature Reviews Microbiology, vol.17, issue.7, pp.441-448, 2019. ,
URL : https://hal.archives-ouvertes.fr/pasteur-02558489
The Saccharomyces cerevisiae COQ10 gene encodes a START domain protein required for function of coenzyme Q in respiration, Journal of Biological Chemistry, vol.280, issue.52, pp.42627-42635, 2005. ,
The RpoS-mediated general stress response in Escherichia coli, Annual Review of Microbiology, vol.65, pp.189-213, 2011. ,
Persistence of uropathogenic Escherichia coli in the face of multiple antibiotics, Antimicrobial Agents and Chemotherapy, vol.54, issue.5, pp.1855-1863, 2010. ,
Rapid and highly efficient method for scarless mutagenesis within the Salmonella enterica chromosome, PLoS One, vol.6, issue.1, 2011. ,
The Fic protein Doc uses an inverted substrate to phosphorylate and inactivate EF-Tu, Nature Chemical Biology, vol.9, issue.12, pp.811-817, 2013. ,
One-step preparation of competent Escherichia coli: Transformation and storage of bacterial cells in the same solution, Proceedings of the National Academy of Sciences of the United States of America, vol.86, pp.2172-2175, 1989. ,
Coq10, a mitochondrial coenzyme Q binding protein, is required for proper respiration in Schizosaccharomyces pombe, FEBS Journal, vol.276, issue.3, pp.748-759, 2009. ,
Yeast petites and small colony variants: For everything there is a season, Advances in Applied Microbiology, vol.85, pp.1-41, 2013. ,
Ciprofloxacin causes persister formation by inducing the TisB toxin in Escherichia coli, PLoS Biology, vol.8, issue.2, 2010. ,
Role of persister cells in chronic infections: Clinical relevance and perspectives on anti-persister therapies, Journal of Medical Microbiology, vol.60, pp.699-709, 2011. ,
Urinary tract infections: Epidemiology, mechanisms of infection and treatment options, Nature Reviews Microbiology, vol.13, issue.5, pp.269-284, 2015. ,
Molecular mechanism of bacterial persistence by HipA, Molecular Cell, vol.52, issue.2, pp.248-254, 2013. ,
Recurrent urinary tract infections in healthy and nonpregnant women, Urological Science, vol.25, issue.1, pp.1-8, 2014. ,
Selective target inactivation rather than global metabolic dormancy causes antibiotic tolerance in uropathogens, Antimicrobial Agents and Chemotherapy, vol.58, issue.4, pp.2089-2097, 2014. ,
Reassessing the role of type II toxin-antitoxin systems in formation of Escherichia coli type II persister cells, Mbio, vol.9, issue.3, pp.640-658, 2018. ,
The Escherichia coli relBE genes belong to a new toxin-antitoxin gene family, Molecular Microbiology, vol.29, issue.4, pp.1065-1076, 1998. ,
A soluble metabolon synthesizes the isoprenoid lipid ubiquinone, Cell Chemistry & Biology, vol.26, issue.4, p.1, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-02071798
Toxins, targets, and triggers: An overview of toxin-antitoxin biology, Molecular Cell, vol.70, issue.5, pp.768-784, 2018. ,
Prophages and growth dynamics confound experimental results with antibiotic-tolerant persister cells, Mbio, vol.8, issue.6, pp.1964-1981, 2017. ,
Mechanisms of bacterial persistence during stress and antibiotic exposure, Science, vol.354, issue.6318, 2016. ,
Internalization of Salmonella by macrophages induces formation of nonreplicating persisters, Science, vol.343, issue.6167, pp.204-208, 2014. ,
Loss of a novel striated muscle-enriched mitochondrial protein Coq10a enhances postnatal cardiac hypertrophic growth, 2019. ,
Laboratory strains of Escherichia coli: Model citizens or deceitful delinquents growing old disgracefully?, Molecular Microbiology, vol.64, issue.4, pp.881-885, 2007. ,
dsdA does not affect colonization of the murine urinary tract by Escherichia coli CFT073, PLoS One, vol.10, issue.9, 2015. ,
RpoS contributes to phagocyte oxidase-mediated stress resistance during urinary tract infection by Escherichia coli CFT073, MBio, vol.4, issue.1, pp.23-36, 2013. ,
Copy number variability of expression plasmids determined by cell sorting and Droplet Digital PCR, Microbial Cell Factories, vol.15, issue.1, p.211, 2016. ,
Mitochondrial proton and electron leaks, Essays in Biochemistry, vol.47, pp.53-67, 2010. ,
The Phyre2 web portal for protein modeling, prediction and analysis, Nature Protocols, vol.10, issue.6, pp.845-858, 2015. ,
Killing by bactericidal antibiotics does not depend on reactive oxygen species, Science, vol.339, issue.6124, pp.1213-1216, 2013. ,
How antibiotics kill bacteria: From targets to networks, Nature Reviews Microbiology, vol.8, issue.6, pp.423-435, 2010. ,
Activation of cryptic aminoglycoside resistance in Salmonella enterica, Molecular Microbiology, vol.80, issue.6, pp.1464-1478, 2011. ,
Aminoglycosides: An overview. Cold Spring Harbor Perspectives in Medicine, vol.6, 2016. ,
A highly efficient Escherichia coli-based chromosome engineering system adapted for recombinogenic targeting and subcloning of BAC DNA, Genomics, vol.73, issue.1, pp.56-65, 2001. ,
Persister cells, Annual Review of Microbiology, vol.64, pp.357-372, 2010. ,
An efficient one-step site-directed deletion, insertion, single and multiple-site plasmid mutagenesis protocol, BMC Biotechnology, vol.8, p.91, 2008. ,
Cell death from antibiotics without the involvement of reactive oxygen species, Science, vol.339, issue.6124, pp.1210-1213, 2013. ,
Distinct type I and type II toxin-antitoxin modules control Salmonella lifestyle inside eukaryotic cells, Scientific Reports, vol.5, p.9374, 2015. ,
The UbiK protein is an accessory factor necessary for bacterial ubiquinone (UQ) biosynthesis and forms a complex with the UQ biogenesis factor UbiJ, Journal of Biological Chemistry, vol.292, issue.28, pp.11937-11950, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01615493
, Cold Spring Harbor Protocols, M9 minimal medium (standard) (2010), 2010.
Variations on the tmRNA gene, RNA Biology, vol.6, issue.4, pp.355-361, 2009. ,
, High efficiency generalized transduction in Escherichia coli O157:H7. F1000Research, vol.2, 2013.
In vitro emergence of high persistence upon periodic aminoglycoside challenge in the ESKAPE pathogens, Antimicrobial Agents and Chemotherapy, vol.60, issue.8, pp.757-773, 2016. ,
Gentamicin uptake in wild-type and aminoglycoside-resistant small-colony mutants of Staphylococcus aureus, Antimicrobial Agents and Chemotherapy, vol.18, issue.5, pp.722-729, 1980. ,
Transposon-sequencing analysis unveils novel genes involved in the generation of persister cells in uropathogenic Escherichia coli, Antimicrobial Agents and Chemotherapy, vol.60, issue.11, pp.6907-6910, 2016. ,
Lambda Red-mediated recombinogenic engineering of enterohemorrhagic and enteropathogenic E. coli, BMC Molecular Biology, vol.4, p.11, 2003. ,
Active starvation responses mediate antibiotic tolerance in biofilms and nutrient-limited bacteria, Science, vol.334, issue.6058, pp.982-986, 2011. ,
URL : https://hal.archives-ouvertes.fr/pasteur-00722468
All three quinone species play distinct roles in ensuring optimal growth under aerobic and fermentative conditions in E. coli K12, PLoS One, vol.13, issue.4, 2018. ,
Toxin-antitoxin systems are important for niche-specific colonization and stress resistance of uropathogenic Escherichia coli, PLoS Path, vol.8, issue.10, 2012. ,
Evolution of ubiquinone biosynthesis: Multiple proteobacterial enzymes with various regioselectivities to catalyze three contiguous aromatic hydroxylation reactions. mSystems, vol.1, pp.91-107, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01424513
Ubiquinone biosynthesis over the entire O2 range: Characterization of a conserved O2-independent pathway, Mbio, vol.10, issue.4, pp.1319-1338, 2019. ,
URL : https://hal.archives-ouvertes.fr/hal-02183791
Slow growth determines nonheritable antibiotic resistance in Salmonella enterica, Science Signalling, vol.12, issue.592, 2019. ,
Identification of Escherichia coli ubiB, a gene required for the first monooxygenase step in ubiquinone biosynthesis, Journal of Bacteriology, vol.182, issue.18, pp.5139-5146, 2000. ,
Staphylococcus aureus Small Colony Variants (SCVs): A road map for the metabolic pathways involved in persistent infections, 2014. ,
, Frontiers in Cellular and Infection Microbiology, vol.4, p.99
Clarifying the link between toxin-antitoxin modules and bacterial persistence, Journal of Molecular Biology, vol.431, issue.18, pp.3462-3471, 2019. ,
The quantitative and condition-dependent Escherichia coli proteome, Nature Biotechnology, vol.34, issue.1, pp.104-110, 2015. ,
ATP-dependent persister formation in Escherichia coli, Mbio, vol.8, issue.1, pp.2267-2283, 2017. ,
Genetic basis of persister tolerance to aminoglycosides in Escherichia coli, Mbio, vol.6, issue.2, pp.78-93, 2015. ,
On the function of the various quinone species in Escherichia coli, FEBS Journal, vol.279, issue.18, pp.3364-3373, 2012. ,
NMR structure of the 18 kDa protein CC1736 from Caulobacter crescentus identifies a member of the START domain superfamily and suggests residues mediating substrate specificity, Proteins, vol.58, issue.3, pp.747-750, 2005. ,
Heterogeneous absorption of antimicrobial peptide LL37 in Escherichia coli cells enhances population survivability, Elife, vol.7, 2018. ,
Ubiquinone limits oxidative stress in Escherichia coli, Microbiology, pp.287-146, 2000. ,
Biochemistry of mitochondrial coenzyme Q biosynthesis, Trends in Biochemical Sciences, vol.42, issue.10, pp.824-843, 2017. ,
STRING v11: Protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets, Nucleic Acids Research, vol.47, issue.D1, pp.607-613, 2018. ,
Endogenous synthesis of coenzyme Q in eukaryotes, Mitochondrion, vol.7, pp.62-71, 2007. ,
Human COQ10A and COQ10B are distinct lipid-binding START domain proteins required for coenzyme Q function, Journal of Lipid Research, vol.60, issue.7, pp.1293-1310, 2019. ,
Frequency of antibiotic application drives rapid evolutionary adaptation of Escherichia coli persistence, Nature Microbiology, vol.1, 2016. ,
Obg and membrane depolarization are part of a microbial bet-hedging strategy that leads to antibiotic tolerance, Molecular Cell, vol.59, issue.1, pp.9-21, 2015. ,
Understanding ubiquinone, Trends in Cell Biology, vol.26, issue.5, pp.367-378, 2016. ,
UbiX is a flavin prenyltransferase required for bacterial ubiquinone biosynthesis, Nature, vol.522, issue.7557, pp.502-506, 2015. ,
EsrE-A yigP locus-encoded transcript-Is a 3? UTR sRNA involved in the respiratory chain of E. coli, Frontiers in Microbiology, vol.8, 1658. ,
Antibiotic efficacy-context matters, Current Opinion in Microbiology, vol.39, pp.73-80, 2017. ,
Over-expression of COQ10 in Saccharomyces cerevisiae inhibits mitochondrial respiration, Biochemical and Biophysical Research Communications, vol.402, issue.1, pp.82-87, 2010. ,
A comprehensive library of fluorescent transcriptional reporters for Escherichia coli, Nature Methods, vol.3, issue.8, pp.623-628, 2006. ,
PasT of Escherichia coli sustains antibiotic tolerance and aerobic respiration as a bacterial homolog of mitochondrial Coq10, Molecular Microbiology, vol.79, issue.6, pp.1418-1429, 2011. ,