<?xml version="1.0" encoding="utf-8"?>
<TEI xmlns="http://www.tei-c.org/ns/1.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:hal="http://hal.archives-ouvertes.fr/" xmlns:gml="http://www.opengis.net/gml/3.3/" xmlns:gmlce="http://www.opengis.net/gml/3.3/ce" version="1.1" xsi:schemaLocation="http://www.tei-c.org/ns/1.0 http://api.archives-ouvertes.fr/documents/aofr-sword.xsd">
  <teiHeader>
    <fileDesc>
      <titleStmt>
        <title>HAL TEI export of hal-01936055</title>
      </titleStmt>
      <publicationStmt>
        <distributor>CCSD</distributor>
        <availability status="restricted">
          <licence target="https://creativecommons.org/publicdomain/zero/1.0/">CC0 1.0 - Universal</licence>
        </availability>
        <date when="2026-05-19T15:13:16+02:00"/>
      </publicationStmt>
      <sourceDesc>
        <p part="N">HAL API Platform</p>
      </sourceDesc>
    </fileDesc>
  </teiHeader>
  <text>
    <body>
      <listBibl>
        <biblFull>
          <titleStmt>
            <title xml:lang="en">Producing a set of models for the iron homeostasis network</title>
            <author role="aut">
              <persName>
                <forename type="first">Nicolas</forename>
                <surname>Mobilia</surname>
              </persName>
              <idno type="halauthorid">1200561-0</idno>
              <affiliation ref="#struct-707"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Alexandre</forename>
                <surname>Donzé</surname>
              </persName>
              <email type="md5">2d1251a94a5b4c4def08f7e57fce0e05</email>
              <email type="domain">eecs.berkeley.com</email>
              <idno type="idhal" notation="numeric">932660</idno>
              <idno type="halauthorid" notation="string">282813-932660</idno>
              <affiliation ref="#struct-82005"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Jean-Marc</forename>
                <surname>Moulis</surname>
              </persName>
              <email type="md5">a6bad16b3f23a83bdc61aad531d7cfdb</email>
              <email type="domain">cea.fr</email>
              <idno type="idhal" notation="numeric">1373779</idno>
              <idno type="halauthorid" notation="string">304015-1373779</idno>
              <idno type="ORCID">https://orcid.org/0000-0001-5615-9852</idno>
              <idno type="IDREF">https://www.idref.fr/060586605</idno>
              <affiliation ref="#struct-139831"/>
              <affiliation ref="#struct-40551"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Eric</forename>
                <surname>Fanchon</surname>
              </persName>
              <email type="md5">89978d1342a6e28523112db21d4756aa</email>
              <email type="domain">univ-grenoble-alpes.fr</email>
              <idno type="idhal" notation="string">eric-fanchon</idno>
              <idno type="idhal" notation="numeric">1377912</idno>
              <idno type="halauthorid" notation="string">105563-1377912</idno>
              <idno type="ORCID">https://orcid.org/0000-0001-7409-962X</idno>
              <idno type="RESEARCHERID">http://www.researcherid.com/rid/M-7721-2014</idno>
              <idno type="IDREF">https://www.idref.fr/032434871</idno>
              <idno type="VIAF">https://viaf.org/viaf/73926876</idno>
              <idno type="ISNI">http://isni.org/isni/0000000039496817</idno>
              <affiliation ref="#struct-391841"/>
            </author>
            <editor role="depositor">
              <persName>
                <forename>Sarah</forename>
                <surname>Hamant</surname>
              </persName>
              <email type="md5">b2b178e8fd6a0d616aa5fe7f0eb33581</email>
              <email type="domain">univ-grenoble-alpes.fr.invalid</email>
            </editor>
            <funder>Microsoft Research</funder>
            <funder>Région Rhône-Alpes Cible 2010</funder>
            <funder>Institut Rhône Alpin des Systèmes Complexes IXXI</funder>
            <funder>UJF Grenoble Programme Agir 2013</funder>
          </titleStmt>
          <editionStmt>
            <edition n="v1" type="current">
              <date type="whenSubmitted">2018-11-27 11:24:58</date>
              <date type="whenModified">2025-09-27 18:36:16</date>
              <date type="whenReleased">2018-11-27 11:24:58</date>
              <date type="whenProduced">2013-09-02</date>
              <ref type="externalLink" target="http://arxiv.org/pdf/1309.0872"/>
            </edition>
            <respStmt>
              <resp>contributor</resp>
              <name key="651303">
                <persName>
                  <forename>Sarah</forename>
                  <surname>Hamant</surname>
                </persName>
                <email type="md5">b2b178e8fd6a0d616aa5fe7f0eb33581</email>
                <email type="domain">univ-grenoble-alpes.fr.invalid</email>
              </name>
            </respStmt>
          </editionStmt>
          <publicationStmt>
            <distributor>CCSD</distributor>
            <idno type="halId">hal-01936055</idno>
            <idno type="halUri">https://hal.univ-grenoble-alpes.fr/hal-01936055</idno>
            <idno type="halBibtex">mobilia:hal-01936055</idno>
            <idno type="halRefHtml">&lt;i&gt;Proceedings Second International Workshop on Hybrid Systems and Biology (HBS 2013)&lt;/i&gt;, Thao Dang and Carla Piazza, Sep 2013, Taormina, Italy. pp.92-98, &lt;a target="_blank" href="https://dx.doi.org/10.4204/EPTCS.125.7"&gt;&amp;#x27E8;10.4204/EPTCS.125.7&amp;#x27E9;&lt;/a&gt;</idno>
            <idno type="halRef">Proceedings Second International Workshop on Hybrid Systems and Biology (HBS 2013), Thao Dang and Carla Piazza, Sep 2013, Taormina, Italy. pp.92-98, &amp;#x27E8;10.4204/EPTCS.125.7&amp;#x27E9;</idno>
            <availability status="restricted"/>
          </publicationStmt>
          <seriesStmt>
            <idno type="stamp" n="CEA">CEA - Commissariat à l'énergie atomique</idno>
            <idno type="stamp" n="UGA">HAL Grenoble Alpes</idno>
            <idno type="stamp" n="IMAG">IMAG</idno>
            <idno type="stamp" n="CNRS">CNRS - Centre national de la recherche scientifique</idno>
            <idno type="stamp" n="UNIV-GRENOBLE1">Université Joseph Fourier - Grenoble I</idno>
            <idno type="stamp" n="INPG">Institut polytechnique de Grenoble</idno>
            <idno type="stamp" n="INRA">INRA - Institut national de la recherche agronomique</idno>
            <idno type="stamp" n="TIMC-IMAG">TIMC</idno>
            <idno type="stamp" n="TIMC-IMAG-BCM" corresp="TIMC-IMAG">BCM : Biologie Computationnelle et Mathématique</idno>
            <idno type="stamp" n="AGREENIUM">Archive ouverte en agrobiosciences</idno>
            <idno type="stamp" n="CEA-DRF" corresp="CEA">Direction de Recherche Fondamentale</idno>
            <idno type="stamp" n="BIG" corresp="CEA">Institut de Biosciences et Biotechnologies de Grenoble</idno>
            <idno type="stamp" n="LBFA">Laboratoire de Bioénergétique Fondamentale et Appliquée</idno>
            <idno type="stamp" n="IRIG" corresp="CEA">Institut de Recherche Interdisciplinaire de Grenoble</idno>
            <idno type="stamp" n="CEA-GRE" corresp="CEA">CEA Grenoble</idno>
            <idno type="stamp" n="UNIV-LYON">Université de Lyon</idno>
            <idno type="stamp" n="INRAE">Institut National de Recherche en Agriculture, Alimentation et Environnement</idno>
            <idno type="stamp" n="TEST-UGA">TEST-UGA</idno>
          </seriesStmt>
          <notesStmt>
            <note type="audience" n="2">International</note>
            <note type="invited" n="0">No</note>
            <note type="popular" n="0">No</note>
            <note type="peer" n="1">Yes</note>
            <note type="proceedings" n="0">No</note>
          </notesStmt>
          <sourceDesc>
            <biblStruct>
              <analytic>
                <title xml:lang="en">Producing a set of models for the iron homeostasis network</title>
                <author role="aut">
                  <persName>
                    <forename type="first">Nicolas</forename>
                    <surname>Mobilia</surname>
                  </persName>
                  <idno type="halauthorid">1200561-0</idno>
                  <affiliation ref="#struct-707"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Alexandre</forename>
                    <surname>Donzé</surname>
                  </persName>
                  <email type="md5">2d1251a94a5b4c4def08f7e57fce0e05</email>
                  <email type="domain">eecs.berkeley.com</email>
                  <idno type="idhal" notation="numeric">932660</idno>
                  <idno type="halauthorid" notation="string">282813-932660</idno>
                  <affiliation ref="#struct-82005"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Jean-Marc</forename>
                    <surname>Moulis</surname>
                  </persName>
                  <email type="md5">a6bad16b3f23a83bdc61aad531d7cfdb</email>
                  <email type="domain">cea.fr</email>
                  <idno type="idhal" notation="numeric">1373779</idno>
                  <idno type="halauthorid" notation="string">304015-1373779</idno>
                  <idno type="ORCID">https://orcid.org/0000-0001-5615-9852</idno>
                  <idno type="IDREF">https://www.idref.fr/060586605</idno>
                  <affiliation ref="#struct-139831"/>
                  <affiliation ref="#struct-40551"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Eric</forename>
                    <surname>Fanchon</surname>
                  </persName>
                  <email type="md5">89978d1342a6e28523112db21d4756aa</email>
                  <email type="domain">univ-grenoble-alpes.fr</email>
                  <idno type="idhal" notation="string">eric-fanchon</idno>
                  <idno type="idhal" notation="numeric">1377912</idno>
                  <idno type="halauthorid" notation="string">105563-1377912</idno>
                  <idno type="ORCID">https://orcid.org/0000-0001-7409-962X</idno>
                  <idno type="RESEARCHERID">http://www.researcherid.com/rid/M-7721-2014</idno>
                  <idno type="IDREF">https://www.idref.fr/032434871</idno>
                  <idno type="VIAF">https://viaf.org/viaf/73926876</idno>
                  <idno type="ISNI">http://isni.org/isni/0000000039496817</idno>
                  <affiliation ref="#struct-391841"/>
                </author>
              </analytic>
              <monogr>
                <meeting>
                  <title>Proceedings Second International Workshop on Hybrid Systems and Biology (HBS 2013)</title>
                  <date type="start">2013-09-02</date>
                  <settlement>Taormina</settlement>
                  <country key="IT">Italy</country>
                </meeting>
                <respStmt>
                  <resp>conferenceOrganizer</resp>
                  <name>Thao Dang and Carla Piazza</name>
                </respStmt>
                <editor>Thao Dang</editor>
                <editor>Carla Piazza</editor>
                <imprint>
                  <biblScope unit="volume">125</biblScope>
                  <biblScope unit="pp">92-98</biblScope>
                </imprint>
              </monogr>
              <idno type="arxiv">1309.0872</idno>
              <idno type="doi">10.4204/EPTCS.125.7</idno>
            </biblStruct>
          </sourceDesc>
          <profileDesc>
            <langUsage>
              <language ident="en">English</language>
            </langUsage>
            <textClass>
              <classCode scheme="halDomain" n="info">Computer Science [cs]</classCode>
              <classCode scheme="halDomain" n="math">Mathematics [math]</classCode>
              <classCode scheme="halDomain" n="sdv">Life Sciences [q-bio]</classCode>
              <classCode scheme="halTypology" n="COMM">Conference papers</classCode>
              <classCode scheme="halOldTypology" n="COMM">Conference papers</classCode>
              <classCode scheme="halTreeTypology" n="COMM">Conference papers</classCode>
            </textClass>
            <abstract xml:lang="en">
              <p>This paper presents a method for modeling biological systems which combines formal techniques on intervals, numerical simulations and satisfaction of Signal Temporal Logic (STL) formulas. The main modeling challenge addressed by this approach is the large uncertainty in the values of the parameters due to the experimental difficulties of getting accurate biological data. This method considers intervals for each parameter and a formal description of the expected behavior of the model. In a first step, it produces reduced intervals of possible parameter values. Then by performing a systematic search in these intervals, it defines sets of parameter values used in the next step. This procedure aims at finding a sub-space where the model robustly behaves as expected. We apply this method to the modeling of the cellular iron homeostasis network in erythroid progenitors. The produced model describes explicitly the regulation mechanism which acts at the translational level.</p>
            </abstract>
          </profileDesc>
        </biblFull>
      </listBibl>
    </body>
    <back>
      <listOrg type="structures">
        <org type="laboratory" xml:id="struct-707" status="OLD">
          <idno type="IdRef">14728936X</idno>
          <idno type="ISNI">0000 0004 4687 1979</idno>
          <idno type="RNSR">199511969L</idno>
          <idno type="ROR">https://ror.org/03985kf35</idno>
          <orgName>Techniques de l'Ingénierie Médicale et de la Complexité - Informatique, Mathématiques et Applications, Grenoble - UMR 5525</orgName>
          <orgName type="acronym">TIMC-IMAG</orgName>
          <date type="start">1993-01-01</date>
          <date type="end">2015-12-31</date>
          <desc>
            <address>
              <addrLine>Domaine de la Merci, 38706 La Tronche, France</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://www-timc.imag.fr</ref>
          </desc>
          <listRelation>
            <relation active="#struct-51016" type="direct"/>
            <relation active="#struct-89889" type="direct"/>
            <relation active="#struct-301767" type="direct"/>
            <relation name="UMR5525" active="#struct-441569" type="direct"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-82005" status="VALID">
          <idno type="ROR">https://ror.org/02jbv0t02</idno>
          <orgName>Lawrence Berkeley National Laboratory [Berkeley]</orgName>
          <orgName type="acronym">LBNL</orgName>
          <desc>
            <address>
              <addrLine>1 Cyclotron Rd. MS 50A-1148, Berkeley, CA 94720</addrLine>
              <country key="US"/>
            </address>
            <ref type="url">http://www.lbl.gov</ref>
          </desc>
        </org>
        <org type="laboratory" xml:id="struct-139831" status="OLD">
          <idno type="IdRef">184930839</idno>
          <idno type="RNSR">201119430B</idno>
          <orgName>Laboratoire de bioénergétique fondamentale et appliquée</orgName>
          <orgName type="acronym">LBFA</orgName>
          <date type="start">1990-01-01</date>
          <date type="end">2015-12-31</date>
          <desc>
            <address>
              <addrLine>CS 40700, F-38058 Grenoble Cedex 9</addrLine>
              <country key="FR"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-51016" type="direct"/>
            <relation name="U1055" active="#struct-303623" type="direct"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-40551" status="OLD">
          <idno type="RNSR">201119551H</idno>
          <orgName>Institut de Biosciences et de Biotechnologies de Grenoble (ex-IRTSV)</orgName>
          <orgName type="acronym">BIG</orgName>
          <date type="start">2011-01-01</date>
          <date type="end">2018-12-31</date>
          <desc>
            <address>
              <addrLine>Anciennement "Institut de Recherche en Technologies et Sciences pour le Vivant (IRTSV)"Centre CEA Grenoble17 rue des Martyrs38054 Grenoble</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.cea.fr/drf/big/</ref>
          </desc>
          <listRelation>
            <relation active="#struct-51016" type="direct"/>
            <relation active="#struct-92114" type="direct"/>
            <relation name="DRF/BIG" active="#struct-300016" type="direct"/>
            <relation active="#struct-303623" type="direct"/>
            <relation active="#struct-441569" type="direct"/>
            <relation active="#struct-445543" type="direct"/>
          </listRelation>
        </org>
        <org type="researchteam" xml:id="struct-391841" status="OLD">
          <orgName>Biologie Computationnelle et Mathématique</orgName>
          <orgName type="acronym">TIMC-IMAG-BCM</orgName>
          <date type="end">2015-12-31</date>
          <desc>
            <address>
              <addrLine>Domaine de la Merci, 38706 La Tronche, France</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://www-timc.imag.fr/bcm</ref>
          </desc>
          <listRelation>
            <relation active="#struct-707" type="direct"/>
            <relation active="#struct-51016" type="indirect"/>
            <relation active="#struct-89889" type="indirect"/>
            <relation active="#struct-301767" type="indirect"/>
            <relation name="UMR5525" active="#struct-441569" type="indirect"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-51016" status="OLD">
          <idno type="IdRef">026404796</idno>
          <idno type="ROR">https://ror.org/02aj0kh94</idno>
          <orgName>Université Joseph Fourier - Grenoble 1</orgName>
          <orgName type="acronym">UJF</orgName>
          <date type="end">2015-12-31</date>
          <desc>
            <address>
              <addrLine>BP 53 - 38041 Grenoble Cedex 9</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.ujf-grenoble.fr/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-89889" status="OLD">
          <idno type="IdRef">026388804</idno>
          <idno type="ROR">https://ror.org/05sbt2524</idno>
          <orgName>Institut polytechnique de Grenoble - Grenoble Institute of Technology</orgName>
          <orgName type="acronym">Grenoble INP</orgName>
          <date type="start">2007-01-01</date>
          <date type="end">2019-12-31</date>
          <desc>
            <address>
              <addrLine>46 avenue Félix Viallet 38031 Grenoble Cedex 1</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.grenoble-inp.fr/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-301767" status="VALID">
          <idno type="ROR">https://ror.org/01c7wz417</idno>
          <orgName>VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement</orgName>
          <orgName type="acronym">VAS</orgName>
          <date type="start">2010-01-01</date>
          <desc>
            <address>
              <addrLine>Université de Lyon, VetAgro Sup, 69280 Marcy l'Etoile (campus vétérinaire); Université de Clermont, VetAgro Sup, 63370 Lempdes (campus agronomique)</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.vetagro-sup.fr/</ref>
          </desc>
        </org>
        <org type="regroupinstitution" xml:id="struct-441569" status="VALID">
          <idno type="IdRef">02636817X</idno>
          <idno type="ISNI">0000000122597504</idno>
          <idno type="ROR">https://ror.org/02feahw73</idno>
          <orgName>Centre National de la Recherche Scientifique</orgName>
          <orgName type="acronym">CNRS</orgName>
          <date type="start">1939-10-19</date>
          <desc>
            <address>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.cnrs.fr/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-303623" status="VALID">
          <idno type="IdRef">026388278</idno>
          <idno type="ROR">https://ror.org/02vjkv261</idno>
          <orgName>Institut National de la Santé et de la Recherche Médicale</orgName>
          <orgName type="acronym">INSERM</orgName>
          <desc>
            <address>
              <addrLine>101, rue de Tolbiac, 75013 Paris</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.inserm.fr</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-92114" status="OLD">
          <idno type="ROR">https://ror.org/01x3gbx83</idno>
          <orgName>Institut National de la Recherche Agronomique</orgName>
          <orgName type="acronym">INRA</orgName>
          <date type="start">1946-05-18</date>
          <date type="end">2019-12-31</date>
          <desc>
            <address>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.inra.fr</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-300016" status="VALID">
          <idno type="IdRef">026372061</idno>
          <idno type="ISNI">0000000122998025</idno>
          <idno type="ROR">https://ror.org/00jjx8s55</idno>
          <idno type="Wikidata">Q868550</idno>
          <orgName>Commissariat à l'énergie atomique et aux énergies alternatives</orgName>
          <orgName type="acronym">CEA</orgName>
          <desc>
            <address>
              <addrLine>Centre de SaclayCentre de GrenobleCentre de Cadaracheetc</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.cea.fr/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-445543" status="OLD">
          <idno type="IdRef">188399275</idno>
          <idno type="ROR">https://ror.org/02rx3b187</idno>
          <orgName>Université Grenoble Alpes [2016-2019]</orgName>
          <orgName type="acronym">UGA [2016-2019]</orgName>
          <date type="start">2016-01-01</date>
          <date type="end">2019-12-31</date>
          <desc>
            <address>
              <addrLine>38058 Grenoble cedex</addrLine>
              <country key="FR"/>
            </address>
          </desc>
        </org>
      </listOrg>
    </back>
  </text>
</TEI>