, Structural basis of x-ray-induced transient photobleaching in a photoactivatable green fluorescent protein, Journal of the American Chemical Society, issue.50, pp.13118063-18065, 2009.
, Proton Pathways in Green Fluorescence Protein, Biophysical Journal, vol.88, issue.4, pp.2452-2461, 2005.
DOI : 10.1529/biophysj.104.055541
, Diversity and Evolution of Coral Fluorescent Proteins, PLoS ONE, vol.8, issue.7, p.2680, 2008.
DOI : 10.1371/journal.pone.0002680.s002
, The Optics of Human Skin, Journal of Investigative Dermatology, vol.77, issue.1, pp.13-19, 1981.
DOI : 10.1111/1523-1747.ep12479191
, Adaptively restrained particle simulations. Physical review letters, 2012.
DOI : 10.1103/physrevlett.109.190201
URL : https://hal.archives-ouvertes.fr/hal-00756121
, Hydrogen bonding in globular proteins, Progress in biophysics and molecular biology, pp.97-179, 1984.
DOI : 10.1016/0079-6107(84)90007-5
, A family of GFP-like proteins with different spectral properties in lancelet Branchiostoma floridae, Biology Direct, vol.3, issue.1, pp.28-28, 2008.
DOI : 10.1186/1745-6150-3-28
, Spectral and structural comparison between bright and dim green fluorescent proteins in Amphioxus, Scientific Reports, vol.114, p.5469, 2014.
DOI : 10.1038/srep05469
, Mechanism of Primary Proton Transfer in Bacteriorhodopsin, Structure, vol.12, issue.7, pp.121281-1288, 2004.
DOI : 10.1016/j.str.2004.04.016
, Tara Oceans studies plankton at planetary scale, Science, vol.348, issue.6237, pp.348873-873, 2015.
DOI : 10.1126/science.aac5605
URL : https://hal.archives-ouvertes.fr/hal-01258211
, Genetically encoded optical sensors for monitoring of intracellular chloride and chloride-selective channels activity, Frontiers in Molecular Neuroscience, vol.2, issue.15, 2009.
DOI : 10.3389/neuro.02.015.2009
, Structural basis for dual excitation and photoisomerization of the Aequorea victoria green fluorescent protein, Proceedings of the National Academy of Sciences, pp.942306-2311, 1997.
DOI : 10.1073/pnas.94.6.2306
, Free R value: a novel statistical quantity for assessing the accuracy of crystal structures, Nature, vol.355, issue.6359, pp.472-475, 1992.
DOI : 10.1038/355472a0
, Advances in spectroscopic methods for biological crystals. 2. Raman spectroscopy, Journal of Applied Crystallography, vol.40, issue.6, pp.401113-1122, 2007.
DOI : 10.1107/S0021889807044202
, How many water molecules can be detected by protein crystallography?, Acta Crystallographica Section D Biological Crystallography, vol.55, issue.2, pp.479-483, 1999.
DOI : 10.1107/S0907444998012086
, Green fluorescent protein as a marker for gene expression, Science, issue.5148, pp.263802-805, 1994.
, Ultra-fast excited state dynamics in green fluorescent protein: multiple states and proton transfer., Proceedings of the National Academy of Sciences, pp.938362-8367, 1996.
DOI : 10.1073/pnas.93.16.8362
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC38676
, Conformer Selection and Induced Fit in Flexible Backbone Protein???Protein Docking Using Computational and NMR Ensembles, Journal of Molecular Biology, vol.381, issue.4, pp.1068-1087, 2008.
DOI : 10.1016/j.jmb.2008.05.042
, The relation between the divergence of sequence and structure in proteins, The EMBO journal, vol.5, issue.4, p.823, 1986.
, Understanding, improving and using green fluorescent proteins, Trends in Biochemical Sciences, vol.20, issue.11, pp.20448-455, 1995.
DOI : 10.1016/S0968-0004(00)89099-4
, The Fluorescent Protein Revolution, 2014.
, ID29: a high-intensity highly automated ESRF beamline for macromolecular crystallography experiments exploiting anomalous scattering, Journal of Synchrotron Radiation, vol.5, issue.3, pp.455-461, 2012.
DOI : 10.1107/S0909049512009715
, Endogenous Green Fluorescent Protein (GFP) in Amphioxus, The Biological Bulletin, vol.213, issue.2, pp.95-100, 2007.
DOI : 10.2307/25066625
, Bioluminescence characteristics of a tropical terrestrial fungus (Basidiomycetes), Luminescence, vol.105, issue.5, pp.462-467, 2007.
DOI : 10.1002/bio.985
, The pymol molecular graphics system Dna probes using fluorescence resonance energy transfer (fret) : designs and applications, Biotechniques, issue.5, p.311106, 2001.
, Expression, crystallization and X-ray data collection from microcrystals of the extracellular domain of the human inhibitory receptor expressed on myeloid cells IREM-1, Acta Crystallographica Section F Structural Biology and Crystallization Communications, vol.63, issue.3, pp.204-208, 2007.
DOI : 10.1107/S1744309107004903
, PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations, Nucleic Acids Research, vol.32, issue.Web Server, pp.32-665, 2004.
DOI : 10.1093/nar/gkh381
, Crystallizing a protein, Principles of Protein X-ray Crystallography, pp.1-21, 1999.
DOI : 10.1007/0-387-33746-6_1
, Long- and Short-Range Electrostatic Fields in GFP Mutants: Implications for Spectral Tuning, Scientific Reports, vol.88, issue.1, 2015.
DOI : 10.1529/biophysj.104.058727
, A practical guide to evaluating colocalization in biological microscopy, AJP: Cell Physiology, vol.300, issue.4, pp.723-742, 2011.
DOI : 10.1152/ajpcell.00462.2010
, Imaging hallmarks of cancer in living mice, Nature Reviews Cancer, vol.4, issue.6, pp.406-418, 2014.
DOI : 10.1038/nrc3742
, : model-building tools for molecular graphics, Acta Crystallographica Section D Biological Crystallography, vol.60, issue.12, pp.2126-2132, 2004.
DOI : 10.1107/S0907444904019158
, Minimum set of mutations needed to optimize cyan fluorescent proteins for live cell imaging, Mol. BioSyst., vol.28, issue.2, pp.258-267, 2013.
DOI : 10.1039/C2MB25303H
, Structure and Excited-State Proton Transfer in the GFP S205A Mutant, The Journal of Physical Chemistry B, vol.115, issue.41, pp.11511776-11785, 2011.
DOI : 10.1021/jp2052689
, Structural basis for the fast maturation of Arthropoda green fluorescent protein, EMBO reports, vol.114, issue.10, pp.1006-1012, 2006.
DOI : 10.1073/pnas.98.2.462
, Fluorescent proteins and genes encoding them, US Patent, vol.8609, p.393, 2013.
, Über den mechanismus der photolumineszenz von farbstoffphosphoren, pp.38-46, 1935.
, FRET imaging, Nature Biotechnology, vol.21, issue.11, pp.1387-1395, 2003.
DOI : 10.1038/nbt896
, Imaging molecular interactions in living cells by FRET microscopy, Current Opinion in Chemical Biology, vol.10, issue.5, pp.409-416, 2006.
DOI : 10.1016/j.cbpa.2006.08.021
, Lysine carboxylation: unveiling a spontaneous post-translational modification, Acta Crystallographica Section D Biological Crystallography, vol.49, issue.1, pp.48-57, 2014.
DOI : 10.1107/S139900471302364X/lv5045sup2.xlsx
, Excited State Dynamics of the Green Fluorescent Protein on the Nanosecond Time Scale, Journal of Chemical Theory and Computation, vol.7, issue.6, pp.1990-1997, 2011.
DOI : 10.1021/ct200150r
, Comparison of simple potential functions for simulating liquid water, The Journal of Chemical Physics, vol.79, issue.2, pp.79926-935, 1983.
DOI : 10.1063/1.445869
, Integration, scaling, space-group assignment and post-refinement, Acta Crystallographica Section D Biological Crystallography, vol.34, issue.2, pp.133-144, 2010.
DOI : 10.1107/S0907444909047374
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2815666
, Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features, Biopolymers, vol.33, issue.12, pp.222577-2637, 1983.
DOI : 10.1002/bip.360221211
, Histone???GFP fusion protein enables sensitive analysis of chromosome dynamics in living mammalian cells, Current Biology, vol.8, issue.7, pp.377-385, 1998.
DOI : 10.1016/S0960-9822(98)70156-3
, Role of internal water molecules in bacteriorhodopsin, Biochimica et Biophysica Acta (BBA) - Bioenergetics, vol.1460, issue.1, pp.177-191, 2000.
DOI : 10.1016/S0005-2728(00)00138-9
, Uncovering the hidden ground state of green fluorescent protein, Proceedings of the National Academy of Sciences, pp.17988-17993, 2004.
DOI : 10.1073/pnas.0404262102
, New Strategies for Fluorescent Probe Design in Medical Diagnostic Imaging, Chemical Reviews, vol.110, issue.5, pp.2620-2640, 2009.
DOI : 10.1021/cr900263j
, Fluorescent proteins at a glance, Journal of Cell Science, vol.124, issue.2, pp.157-160, 2011.
DOI : 10.1242/jcs.072744
, Cyan and yellow super fluorescent proteins with improved brightness, protein folding, and fret förster radius, Biochemistry, issue.21, pp.456570-6580, 2006.
DOI : 10.1021/bi0516273
, Inference of Macromolecular Assemblies from Crystalline State, Journal of Molecular Biology, vol.372, issue.3, pp.774-797, 2007.
DOI : 10.1016/j.jmb.2007.05.022
, Principles of fluorescence spectroscopy, 2006.
DOI : 10.1007/978-0-387-46312-4
, Principles of fluorescence spectroscopy, 2013.
DOI : 10.1007/978-0-387-46312-4
, Ultrafast Photoconversion of the Green Fluorescent Protein Studied by Accumulative Femtosecond Spectroscopy, Biophysical Journal, vol.96, issue.7, pp.962763-2770, 2009.
DOI : 10.1016/j.bpj.2008.11.049
, AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR, Journal of Biomolecular NMR, vol.8, issue.4, pp.477-486, 1996.
DOI : 10.1007/BF00228148
, Bioengineers look beyond patents, Nature, vol.499, issue.7456, pp.16-17, 2013.
DOI : 10.1038/499016a
, The interpretation of protein structures: Estimation of static accessibility, Journal of Molecular Biology, vol.55, issue.3, pp.379-383, 1971.
DOI : 10.1016/0022-2836(71)90324-X
, Intrinsic Dynamics in ECFP and Cerulean Control Fluorescence Quantum Yield, Biochemistry, vol.48, issue.42, pp.4810038-10046, 2009.
DOI : 10.1021/bi901093w
, Proton shuttle in green fluorescent protein studied by dynamic simulations, Proceedings of the National Academy of Sciences, pp.2778-2781, 2002.
, Langevin dynamics of peptides: The frictional dependence of isomerization rates ofN-acetylalanyl-N?-methylamide, Biopolymers, vol.182, issue.5, pp.32523-535, 1992.
DOI : 10.1002/bip.360320508
, The penultimate rotamer library, Proteins : Structure, Function, and Bioinformatics, issue.3, pp.40389-408, 2000.
DOI : 10.1002/1097-0134(20000815)40:3<389::aid-prot50>3.3.co;2-u
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.555.4071
, Bioimaging studies in situ and in vivo, 2013.
, A novel yellowish-green fluorescent protein from the marine copepod, Chiridius poppei, and its use as a reporter protein in HeLa cells, Gene, vol.372, pp.18-25, 2006.
DOI : 10.1016/j.gene.2005.11.031
, Fluorescent proteins from nonbioluminescent anthozoa species, Nat Biotech, issue.10, pp.17969-973, 1999.
, crystallographic software, Journal of Applied Crystallography, vol.40, issue.4, pp.658-674, 2007.
DOI : 10.1107/S0021889807021206
, Introduction to macromolecular crystallography, 2011.
, Molecular dynamics simulations of the BIBLIOGRAPHIE nip7 proteins from the marine deep-and shallow-water pyrococcus species, BMC structural biology, vol.14, issue.1, p.1, 2014.
, The first mutant of the aequorea victoria green fluorescent protein that forms a red chromophoreâ??, Biochemistry, issue.16, pp.474666-4673, 2008.
, Settle: An analytical version of the SHAKE and RATTLE algorithm for rigid water models, Journal of Computational Chemistry, vol.114, issue.8, pp.13952-962, 1992.
DOI : 10.1002/jcc.540130805
, Dynamic and quantitative Ca2+ measurements using improved cameleons, Proceedings of the National Academy of Sciences, pp.962135-2140, 1999.
DOI : 10.1073/pnas.96.5.2135
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC26749
, Fluorescent indicators for ca2& ;plus ; based on green fluorescent proteins and calmodulin, Nature, issue.6645, pp.388882-887, 1997.
, Mechanisms of protein fluorophore formation and engineering, Current Opinion in Chemical Biology, vol.7, issue.5, pp.557-562, 2003.
DOI : 10.1016/S1367-5931(03)00097-8
, Refinement of Macromolecular Structures by the Maximum-Likelihood Method, Acta Crystallographica Section D Biological Crystallography, vol.53, issue.3, pp.240-255, 1997.
DOI : 10.1107/S0907444996012255
, Branchiostoma derived fluorescent proteins, US Patent, vol.8680, p.235, 2014.
, A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications, Nature Biotechnology, vol.20, issue.1, pp.87-90, 2002.
DOI : 10.1038/nbt0102-87
, Chemical nature of the light emitter of the Aequorea green fluorescent protein, Proceedings of the National Academy of Sciences, pp.9313617-13622, 1996.
DOI : 10.1073/pnas.93.24.13617
, Crystal Structure of the Aequorea victoria Green Fluorescent Protein, Science, vol.273, issue.5280, pp.2731392-1395, 1996.
DOI : 10.1126/science.273.5280.1392
, Contribution of hydrogen bonds to protein stability, Protein Science, vol.131, issue.5, pp.652-661, 2014.
DOI : 10.1002/pro.2449
, Proton transfer pathways and mechanism in bacterial reaction centers, FEBS Letters, vol.84, issue.1, pp.45-50, 2003.
DOI : 10.1016/S0014-5793(03)01149-9
, Spicilegia zoologica, quibus novae imprimis et obscurae animalium species iconibus, descriptionibus atque commentariis illustrantur, 1774.
DOI : 10.5962/bhl.title.39832
URL : http://www.biodiversitylibrary.org/item/88609
, The structural basis for spectral variations in green fluorescent protein, Nature Structural Biology, vol.9, issue.5, pp.361-365, 1997.
DOI : 10.1016/0014-5793(94)00859-0
, An analysis of the accuracy of Langevin and molecular dynamics algorithms, Molecular Physics, vol.73, issue.6, pp.651409-1419, 1988.
DOI : 10.1080/00268978800101881
, CAVER: Algorithms for Analyzing Dynamics of Tunnels in Macromolecules, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol.13, issue.3, pp.505-517, 2016.
DOI : 10.1109/TCBB.2015.2459680
, Expanding the view of proton pumping in cytochrome c oxidase through computer simulation, Biochimica et Biophysica Acta (BBA) - Bioenergetics, vol.1817, issue.4, pp.1817518-525, 2012.
DOI : 10.1016/j.bbabio.2011.11.017
, Polarisation de la lumi??re de fluorescence. Vie moyenne des mol??cules dans l'etat excit??, Journal de Physique et le Radium, vol.7, issue.12, pp.390-401, 1926.
DOI : 10.1051/jphysrad:01926007012039000
, High mobility of proteins in the mammalian cell nucleus, Nature, issue.6778, pp.404604-609, 2000.
, Exploring the folding pathway of green fluorescent protein through disulfide engineering, Protein Science, vol.74, issue.3, pp.341-353, 2015.
DOI : 10.1002/pro.2621
, ): a novel GYG chromophore covalently bound to a nearby tyrosine, Acta Crystallographica Section D Biological Crystallography, vol.98, issue.9, pp.691850-60, 2013.
DOI : 10.1107/S0907444913015424
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3760133
, ): structure and structure-based mutagenesis, Acta Crystallographica Section D Biological Crystallography, vol.45, issue.6, pp.691005-1012, 2013.
DOI : 10.1107/S0907444913004034
, Expression of mammalian gamma-aminobutyric acid receptors with distinct pharmacology in Xenopus oocytes., Proceedings of the National Academy of Sciences, pp.884318-4322, 1991.
DOI : 10.1073/pnas.88.10.4318
, Primary structure of the Aequorea victoria green-fluorescent protein, Gene, vol.111, issue.2, pp.229-262, 1992.
DOI : 10.1016/0378-1119(92)90691-H
, The amphioxus genome and the evolution of the chordate karyotype, Nature, vol.19, issue.7198, pp.4531064-1071, 2008.
DOI : 10.1038/nature06967
, Stereochemistry of polypeptide chain configurations, Journal of Molecular Biology, vol.7, issue.1, pp.95-99, 1963.
DOI : 10.1016/S0022-2836(63)80023-6
, A New Type of Secondary Radiation, Nature, vol.121, issue.3048, pp.501-502, 1928.
DOI : 10.1038/121501c0
, An improved cyan fluorescent protein variant useful for FRET, Nature Biotechnology, vol.22, issue.4, pp.445-449, 2004.
DOI : 10.1038/nbt945
, Deciphering key features in protein structures with the new ENDscript server, Nucleic Acids Research, vol.42, issue.W1, pp.320-324, 2014.
DOI : 10.1093/nar/gku316
, The molecular replacement method, Acta Crystallographica Section A Foundations of Crystallography, vol.46, issue.2, pp.73-82, 1990.
DOI : 10.1107/S0108767389009815
, Stabilizing role of glutamic acid 222 in the structure of Enhanced Green Fluorescent Protein, Journal of Structural Biology, vol.174, issue.2, pp.385-390, 2011.
DOI : 10.1016/j.jsb.2011.02.004
, Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes, Journal of Computational Physics, vol.23, issue.3, pp.327-341, 1977.
DOI : 10.1016/0021-9991(77)90098-5
, Improving diffraction by humidity control: a novel device compatible with X-ray beamlines, Acta Crystallographica Section D Biological Crystallography, vol.65, issue.12, pp.651237-1246, 2009.
DOI : 10.1107/S0907444909037822/gm5010sup2.mov
, GFP-like Proteins as Ubiquitous Metazoan Superfamily: Evolution of Functional Features and Structural Complexity, Molecular biology and evolution, pp.841-850, 2004.
DOI : 10.1093/molbev/msh079
, Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein, Nature Biotechnology, vol.177, issue.12, pp.221567-1572, 2004.
DOI : 10.1016/S0165-0270(00)00354-X
, A bright monomeric green fluorescent protein derived from Branchiostoma lanceolatum, Nature Methods, vol.10, issue.5, pp.407-416, 2013.
DOI : 10.1111/j.1600-0854.2012.01336.x
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3811051
, Advances in fluorescent protein technology, Journal of Cell Science, issue.13, pp.1242321-2321, 2011.
DOI : 10.1242/jcs.094722
URL : http://jcs.biologists.org/cgi/content/short/124/13/2321
, Red fluorescent proteins (RFPs) and RFP-based biosensors for neuronal imaging applications, Neurophotonics, vol.2, issue.3, pp.31203-031203, 2015.
DOI : 10.1117/1.NPh.2.3.031203
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4478792
, green fluorescent protein, FEBS Letters, vol.75, issue.2, pp.220-222, 1979.
DOI : 10.1016/0014-5793(79)80818-2
, Discovery of Green Fluorescent Protein (GFP) (Nobel Lecture), Angewandte Chemie International Edition, vol.263, issue.31, pp.485590-5602, 2009.
DOI : 10.1002/anie.200902240
, Properties of the bioluminescent protein aequorin, Biochemistry, vol.8, issue.10, pp.3991-3998, 1969.
DOI : 10.1021/bi00838a015
, Calcium Binding, Quantum Yield, and Emitting Molecule in Aequorin Bioluminescence, Nature, vol.51, issue.5265, pp.2271356-2271363, 1970.
DOI : 10.1038/2271356a0
, Structure of the light-emitting moiety of aequorin, Biochemistry, vol.11, issue.9, pp.1602-1610, 1972.
DOI : 10.1021/bi00759a009
, Extraction, Purification and Properties of Aequorin, a Bioluminescent Protein from the Luminous Hydromedusan,Aequorea, Journal of Cellular and Comparative Physiology, vol.5, issue.3, pp.223-262, 1962.
DOI : 10.1002/jcp.1030590302
, Microdetermination of Calcium by Aequorin Luminescence, Science, vol.140, issue.3573, pp.1401339-1401379, 1963.
DOI : 10.1126/science.140.3573.1339
, The Hole in the Barrel: Water Exchange at the GFP Chromophore, The Journal of Physical Chemistry B, vol.119, issue.8, pp.3464-3478, 2015.
DOI : 10.1021/jp5127255
, Visualizing Proton Antenna in a High-Resolution Green Fluorescent Protein Structure, Journal of the American Chemical Society, vol.132, issue.32, pp.13211093-11102, 2010.
DOI : 10.1021/ja1010652
, An alternative excited-state proton transfer pathway in green fluorescent protein variant S205V, Protein Science, vol.14, issue.12, pp.162703-2710, 2007.
DOI : 10.1110/ps.073112007
, Clustal omega, accurate alignment of very large numbers of sequences. Multiple sequence alignment methods, pp.105-116, 2014.
, Proton Transfer in Wild-Type GFP and S205V Mutant Is Reduced by Conformational Changes of Residues in the Proton Wire, The Journal of Physical Chemistry B, vol.117, issue.40, pp.11921-11931, 2013.
DOI : 10.1021/jp405698g
, Base Catalysis of Chromophore Formation in Arg96 and Glu222 Variants of Green Fluorescent Protein, Journal of Biological Chemistry, vol.280, issue.28, pp.28026248-26255, 2005.
DOI : 10.1074/jbc.M412327200
, Observation of Excited-State Proton Transfer in Green Fluorescent Protein using Ultrafast Vibrational Spectroscopy, Journal of the American Chemical Society, vol.127, issue.9, pp.2864-2865, 2005.
DOI : 10.1021/ja042466d
, An Alternate Proton Acceptor for Excited-State Proton Transfer in Green Fluorescent Protein:?? Rewiring GFP, Journal of the American Chemical Society, vol.130, issue.4, pp.1227-1235, 2008.
DOI : 10.1021/ja0754507
, Photochromicity and Fluorescence Lifetimes of Green Fluorescent Protein, The Journal of Physical Chemistry B, vol.103, issue.40, pp.8612-8617, 1999.
DOI : 10.1021/jp991425e
, Calculation of Local Water Densities in Biological Systems: A Comparison of Molecular Dynamics Simulations and the 3D-RISM-KH Molecular Theory of Solvation, The Journal of Physical Chemistry B, vol.115, issue.2, pp.319-328, 2010.
DOI : 10.1021/jp102587q
, Structural basis for red-shifted emission of a gfp-like protein from the marine copepod chiridius poppei, Genes to Cells, issue.6, pp.14727-737, 2009.
, Protein Side-Chain Motion and Hydration in Proton-Transfer Pathways. Results for Cytochrome P450cam, Journal of the American Chemical Society, vol.125, issue.13, pp.1253931-3940, 2003.
DOI : 10.1021/ja016860c
, The green fluorescent protein. Annual review of biochemistry, pp.509-544, 1998.
, Rosy dawn for fluorescent proteins, Nature Biotechnology, vol.17, issue.10, pp.956-957, 1999.
DOI : 10.1038/13648
, Constructing and exploiting the fluorescent protein paintbox (nobel lecture), Angewandte Chemie International Edition, issue.31, pp.485612-5626, 2009.
DOI : 10.1002/anie.200901916
, Constructing and exploiting the fluorescent protein paintbox (nobel lecture), Angewandte Chemie International Edition, issue.31, pp.485612-5626, 2009.
DOI : 10.1002/anie.200901916
, Molecular fluorescence : principles and applications, 2012.
DOI : 10.1002/9783527650002
, Relation between pH, structure, and absorption spectrum of Cerulean: A study by molecular dynamics and TD DFT calculations, Proteins: Structure, Function, and Bioinformatics, vol.400, issue.4, pp.1040-1054, 2010.
DOI : 10.1002/prot.22628
, Phototransformation of green fluorescent protein with uv and visible light leads to decarboxylation of glutamate 222, Nature Structural & Molecular Biology, vol.9, issue.1, pp.37-41, 2002.
, Characterization of the photoconversion of green fluorescent protein with ftir spectroscopy, Biochemistry, issue.48, pp.3716915-16921, 1998.
, Ultrafast and low-barrier motions in the photoreactions of the green fluorescent protein, International Society for Optics and Photonics, pp.609806-609806, 2006.
, Reverse pH-Dependence of Chromophore Protonation Explains the Large Stokes Shift of the Red Fluorescent Protein mKeima, Journal of the American Chemical Society, vol.131, issue.30, pp.13110356-10357, 2009.
DOI : 10.1021/ja903695n
URL : https://hal.archives-ouvertes.fr/hal-00424231
, Structural basis of spectral shifts in the yellow-emission variants of green fluorescent protein, Structure, vol.6, issue.10, pp.61267-1277, 1998.
DOI : 10.1016/S0969-2126(98)00127-0
, Sensitivity of the yellow variant of green fluorescent protein to halides and nitrate, Current Biology, vol.9, issue.17, pp.628-629, 1999.
DOI : 10.1016/S0960-9822(99)80408-4
, How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?, Journal of Computational Chemistry, vol.18, issue.12, pp.1049-1074, 2000.
DOI : 10.1002/1096-987X(200009)21:12<1049::AID-JCC3>3.0.CO;2-F
, Evolution of new nonantibody proteins via iterative somatic hypermutation, Proceedings of the National Academy of Sciences, vol.101, issue.48, pp.16745-16749, 2004.
DOI : 10.1073/pnas.0407752101
, Implications for bcd mRNA localization from spatial distribution of exu protein in Drosophila oogenesis, Nature, vol.369, issue.6479, pp.369400-403, 1994.
DOI : 10.1038/369400a0
, Visualization of Intracellular Movement of Vaccinia Virus Virions Containing a Green Fluorescent Protein-B5R Membrane Protein Chimera, Journal of Virology, vol.75, issue.10, pp.754802-4813, 2001.
DOI : 10.1128/JVI.75.10.4802-4813.2001
, Biochemical and physical properties of green fluorescent protein. Green fluorescent protein : properties, applications and protocols, pp.39-65, 2005.
, Reversible denaturation of Aequorea green-fluorescent protein: physical separation and characterization of the renatured protein, Biochemistry, vol.21, issue.19, pp.4535-4540, 1982.
DOI : 10.1021/bi00262a003
, Properties of the coelenterate green-fluorescent proteins. Bioluminescence and Chemiluminescence : Basic Chemistry and Analytical applications, pp.235-242, 1981.
, The 2.1?? Crystal Structure of copGFP, a Representative Member of the Copepod Clade Within the Green Fluorescent Protein Superfamily, Journal of Molecular Biology, vol.359, issue.4, pp.890-900, 2006.
DOI : 10.1016/j.jmb.2006.04.002
, Insight into the structure and the mechanism of the slow proton transfer in the GFP double mutant T203V/S205A, Physical Chemistry Chemical Physics, vol.129, issue.23, pp.1611211-11223, 2014.
DOI : 10.1039/c4cp00311j
, host strains for tolerance to cytosine methylation in plasmid and phage recombinants, Nucleic Acids Research, vol.17, issue.9, pp.3469-3478, 1989.
DOI : 10.1093/nar/17.9.3469
, A bioluminescence resonance energy transfer (BRET) system: Application to interacting circadian clock proteins, Proceedings of the National Academy of Sciences, vol.96, issue.1, pp.151-156, 1999.
DOI : 10.1073/pnas.96.1.151
, Refined crystal structure of DsRed, a red fluorescent protein from coral, at 2.0-A resolution, Proceedings of the National Academy of Sciences, pp.462-467, 2001.
DOI : 10.1073/pnas.98.2.462
, The evolution of genes encoding for green fluorescent proteins : insights from cephalochordates (amphioxus) Scientific Reports, 2016.
, Phosphorylated serine residues and an arginine-rich domain of the moloney murine leukemia virus p12 protein are required for early events of viral infection, Journal of virology, vol.77, issue.3, pp.1820-1829, 2003.
, Molecular Biology and Mutation of Green Fluorescent Protein, Green Fluorescent Protein : Properties, Applications, and Protocols, p.83, 2006.
DOI : 10.1002/0471739499.ch5
, Partitioning of Lipid-Modified Monomeric GFPs into Membrane Microdomains of Live Cells, Science, vol.296, issue.5569, pp.296913-916, 2002.
DOI : 10.1126/science.1068539
, : time- and space-resolved modelling of dose in macromolecular crystallography, Journal of Applied Crystallography, vol.20, issue.4, pp.1225-1230, 2013.
DOI : 10.1107/S0021889813011461/rr5041sup1.pdf
, Green Fluorescent Protein (GFP):?? Applications, Structure, and Related Photophysical Behavior, Chemical Reviews, vol.102, issue.3, pp.759-782, 2002.
DOI : 10.1021/cr010142r
, Illuminating Disease : An Introduction to Green Fluorescent Proteins, ) Total reflections 835157 (86173) 670077 (65962) 1330789 (131417) Unique reflections 217268, pp.29-31, 2015.
, Structural Basis of X-ray-Induced Transient Photobleaching in a Photoactivatable Green Fluorescent Protein, Journal of the American Chemical Society, vol.131, issue.50, pp.18063-18065, 2009.
DOI : 10.1021/ja907296v
URL : https://hal.archives-ouvertes.fr/hal-00474158
, Diversity and Evolution of Coral Fluorescent Proteins, PLoS ONE, vol.8, issue.7, p.2680, 2008.
DOI : 10.1371/journal.pone.0002680.s002
, Direct Evidence for a Peroxide Intermediate and a Reactive Enzyme-Substrate-Dioxygen Configuration in a Cofactor-free Oxidase, Angewandte Chemie International Edition, vol.52, issue.50, pp.13710-13714, 2014.
DOI : 10.1002/anie.201405485
URL : https://hal.archives-ouvertes.fr/hal-01148970
, Acta Cryst, pp.328-341, 2000.
, Raman-Assisted Crystallography Suggests a Mechanism of X-Ray-Induced Disulfide Radical Formation and Reparation, Structure, vol.18, issue.11, pp.1410-1419, 2010.
DOI : 10.1016/j.str.2010.09.010
, Endogenous Green Fluorescent Protein (GFP) in Amphioxus, The Biological Bulletin, vol.213, issue.2, pp.95-100, 2007.
DOI : 10.2307/25066625
, Isotopic Labeling and Normal-Mode Analysis of a Model Green Fluorescent Protein Chromophore, The Journal of Physical Chemistry B, vol.106, issue.23, pp.6056-6066, 2002.
DOI : 10.1021/jp0145560
, Acta Cryst, pp.125-132, 2010.
, Initial Events in the Photocycle of Photoactive Yellow Protein, Journal of Biological Chemistry, vol.279, issue.25, pp.26417-26424, 2004.
DOI : 10.1074/jbc.M311961200
, Fluorescent proteins at a glance, Journal of Cell Science, vol.124, issue.2, pp.157-160, 2011.
DOI : 10.1242/jcs.072744
, Inference of Macromolecular Assemblies from Crystalline State, Journal of Molecular Biology, vol.372, issue.3, pp.774-797, 2007.
DOI : 10.1016/j.jmb.2007.05.022
, Specific Damage Induced by X-ray Radiation and Structural Changes in the Primary Photoreaction of Bacteriorhodopsin, Journal of Molecular Biology, vol.324, issue.3, pp.469-481, 2002.
DOI : 10.1016/S0022-2836(02)01110-5
, crystallographic software, Journal of Applied Crystallography, vol.40, issue.4, pp.658-674, 2007.
DOI : 10.1107/S0021889807021206
, Acta Cryst, Z. & Pletnev, S, vol.69, pp.1850-1860, 2013.
, The ???fingerprint??? that X-rays can leave on structures, Structure, vol.8, issue.3, pp.315-328, 2000.
DOI : 10.1016/S0969-2126(00)00109-X
, Stabilizing role of glutamic acid 222 in the structure of Enhanced Green Fluorescent Protein, Journal of Structural Biology, vol.174, issue.2, pp.385-390, 2011.
DOI : 10.1016/j.jsb.2011.02.004
, ID29: a high-intensity highly automated ESRF beamline for macromolecular crystallography experiments exploiting anomalous scattering, Journal of Synchrotron Radiation, vol.5, issue.3, pp.455-461, 2012.
DOI : 10.1107/S0909049512009715
, A bright monomeric green fluorescent protein derived from Branchiostoma lanceolatum, Nature Methods, vol.10, issue.5, pp.407-409, 2013.
DOI : 10.1111/j.1600-0854.2012.01336.x
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3811051
, Acta Cryst, pp.15-26, 2015.
, THE GREEN FLUORESCENT PROTEIN, Annual Review of Biochemistry, vol.67, issue.1, pp.509-544, 1998.
DOI : 10.1146/annurev.biochem.67.1.509
, Sensitivity of the yellow variant of green fluorescent protein to halides and nitrate, Current Biology, vol.9, issue.17, pp.628-629, 1999.
DOI : 10.1016/S0960-9822(99)80408-4
, Article Acta Cristallographica section D: Structural Biology