Recombinational DNA Repair in Bacteria and the RecA Protein, Prog. Nucleic Acid Res. Mol. Biol, vol.63, pp.311-366, 1999. ,
DOI : 10.1016/S0079-6603(08)60726-6
The importance of repairing stalled replication forks, Nature, vol.404, pp.37-41, 2000. ,
Initiation of genetic recombination and recombination-dependent replication, Trends in Biochemical Sciences, vol.25, issue.4, pp.156-165, 2000. ,
DOI : 10.1016/S0968-0004(00)01569-3
DNA replication meets genetic exchange: Chromosomal damage and its repair by homologous recombination, Proc. Natl Acad. Sci. USA, 98, pp.8461-8468, 2001. ,
DOI : 10.1073/pnas.151260698
Protein interactions in genetic recombination in Escherichia coli. Interactions involving RecO and RecR overcome the inhibition of RecA by single-stranded DNA-binding protein, J. Biol. Chem, vol.269, pp.30005-30013, 1994. ,
RecFOR proteins are essential for Pol V-mediated translesion synthesis and mutagenesis, The EMBO Journal, vol.11, issue.24, pp.5754-5763, 2006. ,
DOI : 10.1038/sj.emboj.7601474
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1698908
On the nature of the RecBC and RecF pathways of conjugal recombination in Escherichia coli, MGG Molecular & General Genetics, vol.179, issue.1, pp.156-161, 1983. ,
DOI : 10.1007/BF00330339
Mechanisms for recFdependent and recB-dependent pathways of postreplication repair in UV-irradiated Escherichia coli uvrB, J. Bacteriol, vol.156, pp.1093-1098, 1983. ,
Genetic recombination of bacterial plasmid DNA: effect of RecF pathway mutations on plasmid recombination in Escherichia coli, 1985. ,
Role of RAD52 Epistasis Group Genes in Homologous Recombination and Double-Strand Break Repair, Microbiology and Molecular Biology Reviews, vol.66, issue.4, pp.630-670, 2002. ,
DOI : 10.1128/MMBR.66.4.630-670.2002
Homologous recombination and maintenance of genome integrity: Cancer and aging through the prism of human RecQ helicases, Mechanisms of Ageing and Development, vol.129, issue.7-8, pp.425-440, 2008. ,
DOI : 10.1016/j.mad.2008.03.003
Cancer-Associated Mutations in BRC Domains of BRCA2 Affect Homologous Recombination Induced by Rad51, Journal of Molecular Biology, vol.393, issue.5, pp.1007-1012, 2009. ,
DOI : 10.1016/j.jmb.2009.09.011
BRCA2 Keeps Rad51 in Line, Molecular Cell, vol.10, issue.6, pp.1262-1263, 2002. ,
DOI : 10.1016/S1097-2765(02)00789-X
Recombinational DNA repair and human disease, Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis, vol.509, issue.1-2, pp.49-78, 2002. ,
DOI : 10.1016/S0027-5107(02)00224-5
Comparative and Evolutionary Analysis of the Bacterial Homologous Recombination Systems, PLoS Genetics, vol.188, issue.2, p.15, 2005. ,
DOI : 0378-1097(2000)188[0209:COGAGC]2.0.CO;2
Effects of the Escherichia coli recF suppressor mutation, recA801, on recF-dependent DNA-repair associated phenomena, Mutation Research/DNA Repair Reports, vol.184, issue.3, pp.181-186, 1987. ,
DOI : 10.1016/0167-8817(87)90015-0
recO and recR mutations delay induction of the SOS response in Escherichia coli, MGG Molecular & General Genetics, vol.100, issue.2, pp.254-258, 1995. ,
DOI : 10.1007/BF00294689
recA (Srf) suppression of recF deficiency in the postreplication repair of UV-irradiated Escherichia coli K-12., Journal of Bacteriology, vol.168, issue.2, pp.940-946, 1986. ,
DOI : 10.1128/jb.168.2.940-946.1986
Cosuppression of recF, recR and recO mutations by mutant recA alleles in Escherichia coli cells, Mutation Research/DNA Repair, vol.294, issue.2, pp.157-166, 1993. ,
DOI : 10.1016/0921-8777(93)90024-B
Properties of a mutant recA-encoded protein reveal a possible role for Escherichia coli recF-encoded protein in genetic recombination., Proceedings of the National Academy of Sciences, vol.85, issue.18, 1988. ,
DOI : 10.1073/pnas.85.18.6592
Direct imaging of RecA nucleation and growth on single molecules of SSB-coated ssDNA, Nature, vol.95, issue.7423, pp.274-278, 2012. ,
DOI : 10.1038/nature11598
Ring-shaped architecture of RecR: implications for its role in homologous recombinational DNA repair, The EMBO Journal, vol.1, issue.10, 2004. ,
DOI : 10.1038/nrm1127
Crystal structure and DNA-binding analysis of RecO from Deinococcus radiodurans, The EMBO Journal, vol.269, issue.5, pp.906-918, 2005. ,
DOI : 10.1126/science.297.5588.1837
A Novel Structure of DNA Repair Protein RecO from Deinococcus radiodurans, Structure, vol.12, issue.10, pp.1881-1889, 2004. ,
DOI : 10.1016/j.str.2004.08.006
Structural conservation of RecF and Rad50: implications for DNA recognition and RecF function, The EMBO Journal, vol.433, issue.3, pp.867-877, 2007. ,
DOI : 10.1038/sj.emboj.7601537
Crystal structure and mutational study of RecOR provide insight into its mode of DNA binding, The EMBO Journal, vol.286, issue.13, pp.3260-3271, 2007. ,
DOI : 10.1038/sj.emboj.7601760
Mechanism of RecO recruitment to DNA by single-stranded DNA binding protein, Nucleic Acids Research, vol.39, issue.14, pp.6305-6314, 2011. ,
DOI : 10.1093/nar/gkr199
Identification of the RecR Toprim Domain as the Binding Site for both RecF and RecO: A ROLE OF RecR IN RecFOR ASSEMBLY AT DOUBLE-STRANDED DNA-SINGLE-STRANDED DNA JUNCTIONS, Journal of Biological Chemistry, vol.281, issue.27, pp.18549-18559, 2006. ,
DOI : 10.1074/jbc.M512658200
RecR forms a ring-like tetramer that encircles dsDNA by forming a complex with RecF, Nucleic Acids Research, vol.36, issue.15, pp.5013-5020, 2008. ,
DOI : 10.1093/nar/gkn471
URL : http://doi.org/10.1093/nar/gkn471
An interaction between the Escherichia coli RecF and RecR proteins dependent on ATP and double-stranded DNA, J. Biol. Chem, vol.270, pp.31397-31404, 1995. ,
RecOR complex including RecR N-N dimer and RecO monomer displays a high affinity for ssDNA, Nucleic Acids Research, vol.40, issue.21, pp.11115-11125, 2012. ,
DOI : 10.1093/nar/gks889
Reaction-diffusion lattice gas: Theory and computer results, Physical Review E, vol.47, issue.2, pp.885-898, 1993. ,
DOI : 10.1103/PhysRevE.47.885
URL : http://diposit.ub.edu/dspace/bitstream/2445/18829/1/501966.pdf
Recombinational DNA Repair: The RecF and RecR Proteins Limit the Extension of RecA Filaments beyond Single-Strand DNA Gaps, Cell, vol.91, issue.3, pp.347-356, 1997. ,
DOI : 10.1016/S0092-8674(00)80418-3
The process of displacing the single-stranded DNA-binding protein from single-stranded DNA by RecO and RecR proteins, Nucleic Acids Research, vol.36, issue.1, pp.94-109, 2008. ,
DOI : 10.1093/nar/gkm1004
ATP Hydrolysis and DNA Binding by the Escherichia coli RecF Protein, Journal of Biological Chemistry, vol.274, issue.22, pp.15367-15374, 1999. ,
DOI : 10.1074/jbc.274.22.15367
DNA annealing by Rad52 Protein is stimulated by specific interaction with the complex of replication protein A and single-stranded DNA, Proc. Natl Acad. Sci. USA, pp.6049-6054, 1998. ,
DOI : 10.1073/pnas.95.11.6049
4 suite and current developments, Acta Crystallographica Section D Biological Crystallography, vol.65, issue.4, pp.235-242, 2011. ,
DOI : 10.1107/S0907444910045749
crystallographic software, Journal of Applied Crystallography, vol.40, issue.4, pp.658-674, 2007. ,
DOI : 10.1107/S0021889807021206
: model-building tools for molecular graphics, Acta Crystallographica Section D Biological Crystallography, vol.60, issue.12, pp.2126-2132, 2004. ,
DOI : 10.1107/S0907444904019158
A robust bulk-solvent correction and anisotropic scaling procedure, Acta Crystallographica Section D Biological Crystallography, vol.61, issue.7, 2005. ,
DOI : 10.1107/S0907444905007894
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808320
MolProbity: all-atom contacts and structure validation for proteins and nucleic acids, Nucleic Acids Research, vol.35, issue.Web Server, pp.375-383, 2007. ,
DOI : 10.1093/nar/gkm216
2.1, a program package for small-angle scattering data analysis, Journal of Applied Crystallography, vol.39, issue.2, pp.277-286, 2006. ,
DOI : 10.1107/S0021889806004699
X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution, Quarterly Reviews of Biophysics, vol.52, issue.03, pp.191-285, 2007. ,
DOI : 10.1016/j.str.2007.02.007
Restoring Low Resolution Structure of Biological Macromolecules from Solution Scattering Using Simulated Annealing, Biophysical Journal, vol.76, issue.6, pp.2879-2886, 1999. ,
DOI : 10.1016/S0006-3495(99)77443-6
shape determination in small-angle scattering, Journal of Applied Crystallography, vol.36, issue.3, pp.860-864, 2003. ,
DOI : 10.1107/S0021889803000268
??? a Program to Evaluate X-ray Solution Scattering of Biological Macromolecules from Atomic Coordinates, Journal of Applied Crystallography, vol.28, issue.6, pp.768-773, 1995. ,
DOI : 10.1107/S0021889895007047
Protein hydration in solution: Experimental observation by x-ray and neutron scattering, Proc. Natl Acad, 1998. ,
DOI : 10.1073/pnas.95.5.2267
Scalable molecular dynamics with NAMD, Journal of Computational Chemistry, vol.84, issue.16, pp.1781-1802, 2005. ,
DOI : 10.1002/jcc.20289
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2486339
Constant pressure molecular dynamics simulation: The Langevin piston method, The Journal of Chemical Physics, vol.103, issue.11, pp.4613-4621, 1995. ,
DOI : 10.1063/1.470648
Constant pressure molecular dynamics algorithms, The Journal of Chemical Physics, vol.101, issue.5, pp.4177-4189, 1994. ,
DOI : 10.1063/1.467468
) method for Ewald sums in large systems, The Journal of Chemical Physics, vol.98, issue.12, pp.10089-10092, 1993. ,
DOI : 10.1063/1.464397
Rattle: A ???velocity??? version of the shake algorithm for molecular dynamics calculations, Journal of Computational Physics, vol.52, issue.1, pp.24-34, 1983. ,
DOI : 10.1016/0021-9991(83)90014-1
Reversible multiple time scale molecular dynamics, The Journal of Chemical Physics, vol.97, issue.3, 1990. ,
DOI : 10.1063/1.463137
All-atom empirical force field for nucleic acids: I. Parameter optimization based on small molecule and condensed phase macromolecular target data, Journal of Computational Chemistry, vol.7, issue.2, 2000. ,
DOI : 10.1002/(SICI)1096-987X(20000130)21:2<86::AID-JCC2>3.0.CO;2-G
Extending the treatment of backbone energetics in protein force fields: Limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations, Journal of Computational Chemistry, vol.44, issue.Pt 6 Pt 1, pp.1400-1415, 2004. ,
DOI : 10.1002/jcc.20065
Comparison of simple potential functions for simulating liquid water, The Journal of Chemical Physics, vol.79, issue.2, pp.926-935, 1983. ,
DOI : 10.1063/1.445869
Evaluation of comparative protein modeling by MODELLER, Proteins: Structure, Function, and Genetics, vol.270, issue.3, pp.318-326, 1995. ,
DOI : 10.1002/prot.340230306
VMD: Visual molecular dynamics, Journal of Molecular Graphics, vol.14, issue.1, pp.33-38, 1996. ,
DOI : 10.1016/0263-7855(96)00018-5
Direct characterization of protein oligomers and their quaternary structures by single-molecule FRET, Chem. Commun., vol.8, issue.8, pp.1138-1140, 2012. ,
DOI : 10.1039/C2CC16528G
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Research, vol.22, issue.22, pp.4673-4680, 1994. ,
DOI : 10.1093/nar/22.22.4673
ESPript/ENDscript: extracting and rendering sequence and 3D information from atomic structures of proteins, Nucleic Acids Research, vol.31, issue.13, pp.3320-3323, 2003. ,
DOI : 10.1093/nar/gkg556
URL : https://hal.archives-ouvertes.fr/hal-00314281